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Plant Protein

Non-plant Protein

ANDN920101 - alpha-CH chemical shifts (Andersen et al., 1992) ARGP820101 - Hydrophobicity index (Argos et al., 1982) ARGP820102 - Signal sequence helical potential (Argos et al., 1982) ARGP820103 - Membrane-buried preference parameters (Argos et al., 1982) BEGF750101 - Conformational parameter of inner helix (Beghin-Dirkx, 1975) BEGF750102 - Conformational parameter of beta-structure (Beghin-Dirkx, 1975) BEGF750103 - Conformational parameter of beta-turn (Beghin-Dirkx, 1975) BHAR880101 - Average flexibility indices (Bhaskaran-Ponnuswamy, 1988) BIGC670101 - Residue volume (Bigelow, 1967) BIOV880101 - Information value for accessibility; average fraction 35% (Biou et al., 1988) BIOV880102 - Information value for accessibility; average fraction 23% (Biou et al., 1988) BROC820101 - Retention coefficient in TFA (Browne et al., 1982) BROC820102 - Retention coefficient in HFBA (Browne et al., 1982) BULH740101 - Transfer free energy to surface (Bull-Breese, 1974) BULH740102 - Apparent partial specific volume (Bull-Breese, 1974) BUNA790101 - alpha-NH chemical shifts (Bundi-Wuthrich, 1979) BUNA790102 - alpha-CH chemical shifts (Bundi-Wuthrich, 1979) BUNA790103 - Spin-spin coupling constants 3JHalpha-NH (Bundi-Wuthrich, 1979) BURA740101 - Normalized frequency of alpha-helix (Burgess et al., 1974) BURA740102 - Normalized frequency of extended structure (Burgess et al., 1974) CHAM810101 - Steric parameter (Charton, 1981) CHAM820101 - Polarizability parameter (Charton-Charton, 1982) CHAM820102 - Free energy of solution in water, kcal/mole (Charton-Charton, 1982) CHAM830101 - The Chou-Fasman parameter of the coil conformation (Charton-Charton, 1983) CHAM830102 - A parameter defined from the residuals obtained from the best correlation CHAM830103 - The number of atoms in the side chain labelled 1+1 (Charton-Charton, 1983) CHAM830104 - The number of atoms in the side chain labelled 2+1 (Charton-Charton, 1983) CHAM830105 - The number of atoms in the side chain labelled 3+1 (Charton-Charton, 1983) CHAM830106 - The number of bonds in the longest chain (Charton-Charton, 1983) CHAM830107 - A parameter of charge transfer capability (Charton-Charton, 1983) CHAM830108 - A parameter of charge transfer donor capability (Charton-Charton, 1983) CHOC750101 - Average volume of buried residue (Chothia, 1975) CHOC760101 - Residue accessible surface area in tripeptide (Chothia, 1976) CHOC760102 - Residue accessible surface area in folded protein (Chothia, 1976) CHOC760103 - Proportion of residues 95% buried (Chothia, 1976) CHOC760104 - Proportion of residues 100% buried (Chothia, 1976) CHOP780101 - Normalized frequency of beta-turn (Chou-Fasman, 1978a) CHOP780201 - Normalized frequency of alpha-helix (Chou-Fasman, 1978b) CHOP780202 - Normalized frequency of beta-sheet (Chou-Fasman, 1978b) CHOP780203 - Normalized frequency of beta-turn (Chou-Fasman, 1978b) CHOP780204 - Normalized frequency of N-terminal helix (Chou-Fasman, 1978b) CHOP780205 - Normalized frequency of C-terminal helix (Chou-Fasman, 1978b) CHOP780206 - Normalized frequency of N-terminal non helical region (Chou-Fasman, 1978b) CHOP780207 - Normalized frequency of C-terminal non helical region (Chou-Fasman, 1978b) CHOP780208 - Normalized frequency of N-terminal beta-sheet (Chou-Fasman, 1978b) CHOP780209 - Normalized frequency of C-terminal beta-sheet (Chou-Fasman, 1978b) CHOP780210 - Normalized frequency of N-terminal non beta region (Chou-Fasman, 1978b) CHOP780211 - Normalized frequency of C-terminal non beta region (Chou-Fasman, 1978b) CHOP780212 - Frequency of the 1st residue in turn (Chou-Fasman, 1978b) CHOP780213 - Frequency of the 2nd residue in turn (Chou-Fasman, 1978b) CHOP780214 - Frequency of the 3rd residue in turn (Chou-Fasman, 1978b) CHOP780215 - Frequency of the 4th residue in turn (Chou-Fasman, 1978b) CHOP780216 - Normalized frequency of the 2nd and 3rd residues in turn (Chou-Fasman, 1978b) CIDH920101 - Normalized hydrophobicity scales for alpha-proteins (Cid et al., 1992) CIDH920102 - Normalized hydrophobicity scales for beta-proteins (Cid et al., 1992) CIDH920103 - Normalized hydrophobicity scales for alpha+beta-proteins (Cid et al., 1992) CIDH920104 - Normalized hydrophobicity scales for alpha/beta-proteins (Cid et al., 1992) CIDH920105 - Normalized average hydrophobicity scales (Cid et al., 1992) COHE430101 - Partial specific volume (Cohn-Edsall, 1943) CRAJ730101 - Normalized frequency of middle helix (Crawford et al., 1973) CRAJ730102 - Normalized frequency of beta-sheet (Crawford et al., 1973) CRAJ730103 - Normalized frequency of turn (Crawford et al., 1973) DAWD720101 - Size (Dawson, 1972) DAYM780101 - Amino acid composition (Dayhoff et al., 1978a) DAYM780201 - Relative mutability (Dayhoff et al., 1978b) DESM900101 - Membrane preference for cytochrome b: MPH89 (Degli Esposti et al., 1990) DESM900102 - Average membrane preference: AMP07 (Degli Esposti et al., 1990) EISD840101 - Consensus normalized hydrophobicity scale (Eisenberg, 1984) EISD860101 - Solvation free energy (Eisenberg-McLachlan, 1986) EISD860102 - Atom-based hydrophobic moment (Eisenberg-McLachlan, 1986) EISD860103 - Direction of hydrophobic moment (Eisenberg-McLachlan, 1986) FASG760101 - Molecular weight (Fasman, 1976) FASG760102 - Melting point (Fasman, 1976) FASG760103 - Optical rotation (Fasman, 1976) FASG760104 - pK-N (Fasman, 1976) FASG760105 - pK-C (Fasman, 1976) FAUJ830101 - Hydrophobic parameter pi (Fauchere-Pliska, 1983) FAUJ880101 - Graph shape index (Fauchere et al., 1988) FAUJ880102 - Smoothed upsilon steric parameter (Fauchere et al., 1988) FAUJ880103 - Normalized van der Waals volume (Fauchere et al., 1988) FAUJ880104 - STERIMOL length of the side chain (Fauchere et al., 1988) FAUJ880105 - STERIMOL minimum width of the side chain (Fauchere et al., 1988) FAUJ880106 - STERIMOL maximum width of the side chain (Fauchere et al., 1988) FAUJ880107 - N.m.r. chemical shift of alpha-carbon (Fauchere et al., 1988) FAUJ880108 - Localized electrical effect (Fauchere et al., 1988) FAUJ880109 - Number of hydrogen bond donors (Fauchere et al., 1988) FAUJ880110 - Number of full nonbonding orbitals (Fauchere et al., 1988) FAUJ880111 - Positive charge (Fauchere et al., 1988) FAUJ880112 - Negative charge (Fauchere et al., 1988) FAUJ880113 - pK-a(RCOOH) (Fauchere et al., 1988) FINA770101 - Helix-coil equilibrium constant (Finkelstein-Ptitsyn, 1977) FINA910101 - Helix initiation parameter at posision i-1 (Finkelstein et al., 1991) FINA910102 - Helix initiation parameter at posision i,i+1,i+2 (Finkelstein et al., 1991) FINA910103 - Helix termination parameter at posision j-2,j-1,j (Finkelstein et al., 1991) FINA910104 - Helix termination parameter at posision j+1 (Finkelstein et al., 1991) GARJ730101 - Partition coefficient (Garel et al., 1973) GEIM800101 - Alpha-helix indices (Geisow-Roberts, 1980) GEIM800102 - Alpha-helix indices for alpha-proteins (Geisow-Roberts, 1980) GEIM800103 - Alpha-helix indices for beta-proteins (Geisow-Roberts, 1980) GEIM800104 - Alpha-helix indices for alpha/beta-proteins (Geisow-Roberts, 1980) GEIM800105 - Beta-strand indices (Geisow-Roberts, 1980) GEIM800106 - Beta-strand indices for beta-proteins (Geisow-Roberts, 1980) GEIM800107 - Beta-strand indices for alpha/beta-proteins (Geisow-Roberts, 1980) GEIM800108 - Aperiodic indices (Geisow-Roberts, 1980) GEIM800109 - Aperiodic indices for alpha-proteins (Geisow-Roberts, 1980) GEIM800110 - Aperiodic indices for beta-proteins (Geisow-Roberts, 1980) GEIM800111 - Aperiodic indices for alpha/beta-proteins (Geisow-Roberts, 1980) GOLD730101 - Hydrophobicity factor (Goldsack-Chalifoux, 1973) GOLD730102 - Residue volume (Goldsack-Chalifoux, 1973) GRAR740101 - Composition (Grantham, 1974) GRAR740102 - Polarity (Grantham, 1974) GRAR740103 - Volume (Grantham, 1974) GUYH850101 - Partition energy (Guy, 1985) HOPA770101 - Hydration number (Hopfinger, 1971), Cited by Charton-Charton (1982) HOPT810101 - Hydrophilicity value (Hopp-Woods, 1981) HUTJ700101 - Heat capacity (Hutchens, 1970) HUTJ700102 - Absolute entropy (Hutchens, 1970) HUTJ700103 - Entropy of formation (Hutchens, 1970) ISOY800101 - Normalized relative frequency of alpha-helix (Isogai et al., 1980) ISOY800102 - Normalized relative frequency of extended structure (Isogai et al., 1980) ISOY800103 - Normalized relative frequency of bend (Isogai et al., 1980) ISOY800104 - Normalized relative frequency of bend R (Isogai et al., 1980) ISOY800105 - Normalized relative frequency of bend S (Isogai et al., 1980) ISOY800106 - Normalized relative frequency of helix end (Isogai et al., 1980) ISOY800107 - Normalized relative frequency of double bend (Isogai et al., 1980) ISOY800108 - Normalized relative frequency of coil (Isogai et al., 1980) JANJ780101 - Average accessible surface area (Janin et al., 1978) JANJ780102 - Percentage of buried residues (Janin et al., 1978) JANJ780103 - Percentage of exposed residues (Janin et al., 1978) JANJ790101 - Ratio of buried and accessible molar fractions (Janin, 1979) JANJ790102 - Transfer free energy (Janin, 1979) JOND750101 - Hydrophobicity (Jones, 1975) JOND750102 - pK (-COOH) (Jones, 1975) JOND920101 - Relative frequency of occurrence (Jones et al., 1992) JOND920102 - Relative mutability (Jones et al., 1992) JUKT750101 - Amino acid distribution (Jukes et al., 1975) JUNJ780101 - Sequence frequency (Jungck, 1978) KANM800101 - Average relative probability of helix (Kanehisa-Tsong, 1980) KANM800102 - Average relative probability of beta-sheet (Kanehisa-Tsong, 1980) KANM800103 - Average relative probability of inner helix (Kanehisa-Tsong, 1980) KANM800104 - Average relative probability of inner beta-sheet (Kanehisa-Tsong, 1980) KARP850101 - Flexibility parameter for no rigid neighbors (Karplus-Schulz, 1985) KARP850102 - Flexibility parameter for one rigid neighbor (Karplus-Schulz, 1985) KARP850103 - Flexibility parameter for two rigid neighbors (Karplus-Schulz, 1985) KHAG800101 - The Kerr-constant increments (Khanarian-Moore, 1980) KLEP840101 - Net charge (Klein et al., 1984) KRIW710101 - Side chain interaction parameter (Krigbaum-Rubin, 1971) KRIW790101 - Side chain interaction parameter (Krigbaum-Komoriya, 1979) KRIW790102 - Fraction of site occupied by water (Krigbaum-Komoriya, 1979) KRIW790103 - Side chain volume (Krigbaum-Komoriya, 1979) KYTJ820101 - Hydropathy index (Kyte-Doolittle, 1982) LAWE840101 - Transfer free energy, CHP/water (Lawson et al., 1984) LEVM760101 - Hydrophobic parameter (Levitt, 1976) LEVM760102 - Distance between C-alpha and centroid of side chain (Levitt, 1976) LEVM760103 - Side chain angle theta(AAR) (Levitt, 1976) LEVM760104 - Side chain torsion angle phi(AAAR) (Levitt, 1976) LEVM760105 - Radius of gyration of side chain (Levitt, 1976) LEVM760106 - van der Waals parameter R0 (Levitt, 1976) LEVM760107 - van der Waals parameter epsilon (Levitt, 1976) LEVM780101 - Normalized frequency of alpha-helix, with weights (Levitt, 1978) LEVM780102 - Normalized frequency of beta-sheet, with weights (Levitt, 1978) LEVM780103 - Normalized frequency of reverse turn, with weights (Levitt, 1978) LEVM780104 - Normalized frequency of alpha-helix, unweighted (Levitt, 1978) LEVM780105 - Normalized frequency of beta-sheet, unweighted (Levitt, 1978) LEVM780106 - Normalized frequency of reverse turn, unweighted (Levitt, 1978) LEWP710101 - Frequency of occurrence in beta-bends (Lewis et al., 1971) LIFS790101 - Conformational preference for all beta-strands (Lifson-Sander, 1979) LIFS790102 - Conformational preference for parallel beta-strands (Lifson-Sander, 1979) LIFS790103 - Conformational preference for antiparallel beta-strands (Lifson-Sander, 1979) MANP780101 - Average surrounding hydrophobicity (Manavalan-Ponnuswamy, 1978) MAXF760101 - Normalized frequency of alpha-helix (Maxfield-Scheraga, 1976) MAXF760102 - Normalized frequency of extended structure (Maxfield-Scheraga, 1976) MAXF760103 - Normalized frequency of zeta R (Maxfield-Scheraga, 1976) MAXF760104 - Normalized frequency of left-handed alpha-helix (Maxfield-Scheraga, 1976) MAXF760105 - Normalized frequency of zeta L (Maxfield-Scheraga, 1976) MAXF760106 - Normalized frequency of alpha region (Maxfield-Scheraga, 1976) MCMT640101 - Refractivity (McMeekin et al., 1964), Cited by Jones (1975) MEEJ800101 - Retention coefficient in HPLC, pH7.4 (Meek, 1980) MEEJ800102 - Retention coefficient in HPLC, pH2.1 (Meek, 1980) MEEJ810101 - Retention coefficient in NaClO4 (Meek-Rossetti, 1981) MEEJ810102 - Retention coefficient in NaH2PO4 (Meek-Rossetti, 1981) MEIH800101 - Average reduced distance for C-alpha (Meirovitch et al., 1980) MEIH800102 - Average reduced distance for side chain (Meirovitch et al., 1980) MEIH800103 - Average side chain orientation angle (Meirovitch et al., 1980) MIYS850101 - Effective partition energy (Miyazawa-Jernigan, 1985) NAGK730101 - Normalized frequency of alpha-helix (Nagano, 1973) NAGK730102 - Normalized frequency of bata-structure (Nagano, 1973) NAGK730103 - Normalized frequency of coil (Nagano, 1973) NAKH900101 - AA composition of total proteins (Nakashima et al., 1990) NAKH900102 - SD of AA composition of total proteins (Nakashima et al., 1990) NAKH900103 - AA composition of mt-proteins (Nakashima et al., 1990) NAKH900104 - Normalized composition of mt-proteins (Nakashima et al., 1990) NAKH900105 - AA composition of mt-proteins from animal (Nakashima et al., 1990) NAKH900106 - Normalized composition from animal (Nakashima et al., 1990) NAKH900107 - AA composition of mt-proteins from fungi and plant (Nakashima et al., 1990) NAKH900108 - Normalized composition from fungi and plant (Nakashima et al., 1990) NAKH900109 - AA composition of membrane proteins (Nakashima et al., 1990) NAKH900110 - Normalized composition of membrane proteins (Nakashima et al., 1990) NAKH900111 - Transmembrane regions of non-mt-proteins (Nakashima et al., 1990) NAKH900112 - Transmembrane regions of mt-proteins (Nakashima et al., 1990) NAKH900113 - Ratio of average and computed composition (Nakashima et al., 1990) NAKH920101 - AA composition of CYT of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920102 - AA composition of CYT2 of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920103 - AA composition of EXT of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920104 - AA composition of EXT2 of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920105 - AA composition of MEM of single-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920106 - AA composition of CYT of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920107 - AA composition of EXT of multi-spanning proteins (Nakashima-Nishikawa, 1992) NAKH920108 - AA composition of MEM of multi-spanning proteins (Nakashima-Nishikawa, 1992) NISK800101 - 8 A contact number (Nishikawa-Ooi, 1980) NISK860101 - 14 A contact number (Nishikawa-Ooi, 1986) NOZY710101 - Transfer energy, organic solvent/water (Nozaki-Tanford, 1971) OOBM770101 - Average non-bonded energy per atom (Oobatake-Ooi, 1977) OOBM770102 - Short and medium range non-bonded energy per atom (Oobatake-Ooi, 1977) OOBM770103 - Long range non-bonded energy per atom (Oobatake-Ooi, 1977) OOBM770104 - Average non-bonded energy per residue (Oobatake-Ooi, 1977) OOBM770105 - Short and medium range non-bonded energy per residue (Oobatake-Ooi, 1977) OOBM850101 - Optimized beta-structure-coil equilibrium constant (Oobatake et al., 1985) OOBM850102 - Optimized propensity to form reverse turn (Oobatake et al., 1985) OOBM850103 - Optimized transfer energy parameter (Oobatake et al., 1985) OOBM850104 - Optimized average non-bonded energy per atom (Oobatake et al., 1985) OOBM850105 - Optimized side chain interaction parameter (Oobatake et al., 1985) PALJ810101 - Normalized frequency of alpha-helix from LG (Palau et al., 1981) PALJ810102 - Normalized frequency of alpha-helix from CF (Palau et al., 1981) PALJ810103 - Normalized frequency of beta-sheet from LG (Palau et al., 1981) PALJ810104 - Normalized frequency of beta-sheet from CF (Palau et al., 1981) PALJ810105 - Normalized frequency of turn from LG (Palau et al., 1981) PALJ810106 - Normalized frequency of turn from CF (Palau et al., 1981) PALJ810107 - Normalized frequency of alpha-helix in all-alpha class (Palau et al., 1981) PALJ810108 - Normalized frequency of alpha-helix in alpha+beta class (Palau et al., 1981) PALJ810109 - Normalized frequency of alpha-helix in alpha/beta class (Palau et al., 1981) PALJ810110 - Normalized frequency of beta-sheet in all-beta class (Palau et al., 1981) PALJ810111 - Normalized frequency of beta-sheet in alpha+beta class (Palau et al., 1981) PALJ810112 - Normalized frequency of beta-sheet in alpha/beta class (Palau et al., 1981) PALJ810113 - Normalized frequency of turn in all-alpha class (Palau et al., 1981) PALJ810114 - Normalized frequency of turn in all-beta class (Palau et al., 1981) PALJ810115 - Normalized frequency of turn in alpha+beta class (Palau et al., 1981) PALJ810116 - Normalized frequency of turn in alpha/beta class (Palau et al., 1981) PARJ860101 - HPLC parameter (Parker et al., 1986) PLIV810101 - Partition coefficient (Pliska et al., 1981) PONP800101 - Surrounding hydrophobicity in folded form (Ponnuswamy et al., 1980) PONP800102 - Average gain in surrounding hydrophobicity (Ponnuswamy et al., 1980) PONP800103 - Average gain ratio in surrounding hydrophobicity (Ponnuswamy et al., 1980) PONP800104 - Surrounding hydrophobicity in alpha-helix (Ponnuswamy et al., 1980) PONP800105 - Surrounding hydrophobicity in beta-sheet (Ponnuswamy et al., 1980) PONP800106 - Surrounding hydrophobicity in turn (Ponnuswamy et al., 1980) PONP800107 - Accessibility reduction ratio (Ponnuswamy et al., 1980) PONP800108 - Average number of surrounding residues (Ponnuswamy et al., 1980) PRAM820101 - Intercept in regression analysis (Prabhakaran-Ponnuswamy, 1982) PRAM820102 - Slope in regression analysis x 1.0E1 (Prabhakaran-Ponnuswamy, 1982) PRAM820103 - Correlation coefficient in regression analysis (Prabhakaran-Ponnuswamy, 1982) PRAM900101 - Hydrophobicity (Prabhakaran, 1990) PRAM900102 - Relative frequency in alpha-helix (Prabhakaran, 1990) PRAM900103 - Relative frequency in beta-sheet (Prabhakaran, 1990) PRAM900104 - Relative frequency in reverse-turn (Prabhakaran, 1990) PTIO830101 - Helix-coil equilibrium constant (Ptitsyn-Finkelstein, 1983) PTIO830102 - Beta-coil equilibrium constant (Ptitsyn-Finkelstein, 1983) QIAN880101 - Weights for alpha-helix at the window position of -6 (Qian-Sejnowski, 1988) QIAN880102 - Weights for alpha-helix at the window position of -5 (Qian-Sejnowski, 1988) QIAN880103 - Weights for alpha-helix at the window position of -4 (Qian-Sejnowski, 1988) QIAN880104 - Weights for alpha-helix at the window position of -3 (Qian-Sejnowski, 1988) QIAN880105 - Weights for alpha-helix at the window position of -2 (Qian-Sejnowski, 1988) QIAN880106 - Weights for alpha-helix at the window position of -1 (Qian-Sejnowski, 1988) QIAN880107 - Weights for alpha-helix at the window position of 0 (Qian-Sejnowski, 1988) QIAN880108 - Weights for alpha-helix at the window position of 1 (Qian-Sejnowski, 1988) QIAN880109 - Weights for alpha-helix at the window position of 2 (Qian-Sejnowski, 1988) QIAN880110 - Weights for alpha-helix at the window position of 3 (Qian-Sejnowski, 1988) QIAN880111 - Weights for alpha-helix at the window position of 4 (Qian-Sejnowski, 1988) QIAN880112 - Weights for alpha-helix at the window position of 5 (Qian-Sejnowski, 1988) QIAN880113 - Weights for alpha-helix at the window position of 6 (Qian-Sejnowski, 1988) QIAN880114 - Weights for beta-sheet at the window position of -6 (Qian-Sejnowski, 1988) QIAN880115 - Weights for beta-sheet at the window position of -5 (Qian-Sejnowski, 1988) QIAN880116 - Weights for beta-sheet at the window position of -4 (Qian-Sejnowski, 1988) QIAN880117 - Weights for beta-sheet at the window position of -3 (Qian-Sejnowski, 1988) QIAN880118 - Weights for beta-sheet at the window position of -2 (Qian-Sejnowski, 1988) QIAN880119 - Weights for beta-sheet at the window position of -1 (Qian-Sejnowski, 1988) QIAN880120 - Weights for beta-sheet at the window position of 0 (Qian-Sejnowski, 1988) QIAN880121 - Weights for beta-sheet at the window position of 1 (Qian-Sejnowski, 1988) QIAN880122 - Weights for beta-sheet at the window position of 2 (Qian-Sejnowski, 1988) QIAN880123 - Weights for beta-sheet at the window position of 3 (Qian-Sejnowski, 1988) QIAN880124 - Weights for beta-sheet at the window position of 4 (Qian-Sejnowski, 1988) QIAN880125 - Weights for beta-sheet at the window position of 5 (Qian-Sejnowski, 1988) QIAN880126 - Weights for beta-sheet at the window position of 6 (Qian-Sejnowski, 1988) QIAN880127 - Weights for coil at the window position of -6 (Qian-Sejnowski, 1988) QIAN880128 - Weights for coil at the window position of -5 (Qian-Sejnowski, 1988) QIAN880129 - Weights for coil at the window position of -4 (Qian-Sejnowski, 1988) QIAN880130 - Weights for coil at the window position of -3 (Qian-Sejnowski, 1988) QIAN880131 - Weights for coil at the window position of -2 (Qian-Sejnowski, 1988) QIAN880132 - Weights for coil at the window position of -1 (Qian-Sejnowski, 1988) QIAN880133 - Weights for coil at the window position of 0 (Qian-Sejnowski, 1988) QIAN880134 - Weights for coil at the window position of 1 (Qian-Sejnowski, 1988) QIAN880135 - Weights for coil at the window position of 2 (Qian-Sejnowski, 1988) QIAN880136 - Weights for coil at the window position of 3 (Qian-Sejnowski, 1988) QIAN880137 - Weights for coil at the window position of 4 (Qian-Sejnowski, 1988) QIAN880138 - Weights for coil at the window position of 5 (Qian-Sejnowski, 1988) QIAN880139 - Weights for coil at the window position of 6 (Qian-Sejnowski, 1988) RACS770101 - Average reduced distance for C-alpha (Rackovsky-Scheraga, 1977) RACS770102 - Average reduced distance for side chain (Rackovsky-Scheraga, 1977) RACS770103 - Side chain orientational preference (Rackovsky-Scheraga, 1977) RACS820101 - Average relative fractional occurrence in A0(i) (Rackovsky-Scheraga, 1982) RACS820102 - Average relative fractional occurrence in AR(i) (Rackovsky-Scheraga, 1982) RACS820103 - Average relative fractional occurrence in AL(i) (Rackovsky-Scheraga, 1982) RACS820104 - Average relative fractional occurrence in EL(i) (Rackovsky-Scheraga, 1982) RACS820105 - Average relative fractional occurrence in E0(i) (Rackovsky-Scheraga, 1982) RACS820106 - Average relative fractional occurrence in ER(i) (Rackovsky-Scheraga, 1982) RACS820107 - Average relative fractional occurrence in A0(i-1) (Rackovsky-Scheraga, 1982) RACS820108 - Average relative fractional occurrence in AR(i-1) (Rackovsky-Scheraga, 1982) RACS820109 - Average relative fractional occurrence in AL(i-1) (Rackovsky-Scheraga, 1982) RACS820110 - Average relative fractional occurrence in EL(i-1) (Rackovsky-Scheraga, 1982) RACS820111 - Average relative fractional occurrence in E0(i-1) (Rackovsky-Scheraga, 1982) RACS820112 - Average relative fractional occurrence in ER(i-1) (Rackovsky-Scheraga, 1982) RACS820113 - Value of theta(i) (Rackovsky-Scheraga, 1982) RACS820114 - Value of theta(i-1) (Rackovsky-Scheraga, 1982) RADA880101 - Transfer free energy from chx to wat (Radzicka-Wolfenden, 1988) RADA880102 - Transfer free energy from oct to wat (Radzicka-Wolfenden, 1988) RADA880103 - Transfer free energy from vap to chx (Radzicka-Wolfenden, 1988) RADA880104 - Transfer free energy from chx to oct (Radzicka-Wolfenden, 1988) RADA880105 - Transfer free energy from vap to oct (Radzicka-Wolfenden, 1988) RADA880106 - Accessible surface area (Radzicka-Wolfenden, 1988) RADA880107 - Energy transfer from out to in(95%buried) (Radzicka-Wolfenden, 1988) RADA880108 - Mean polarity (Radzicka-Wolfenden, 1988) RICJ880101 - Relative preference value at N'' (Richardson-Richardson, 1988) RICJ880102 - Relative preference value at N' (Richardson-Richardson, 1988) RICJ880103 - Relative preference value at N-cap (Richardson-Richardson, 1988) RICJ880104 - Relative preference value at N1 (Richardson-Richardson, 1988) RICJ880105 - Relative preference value at N2 (Richardson-Richardson, 1988) RICJ880106 - Relative preference value at N3 (Richardson-Richardson, 1988) RICJ880107 - Relative preference value at N4 (Richardson-Richardson, 1988) RICJ880108 - Relative preference value at N5 (Richardson-Richardson, 1988) RICJ880109 - Relative preference value at Mid (Richardson-Richardson, 1988) RICJ880110 - Relative preference value at C5 (Richardson-Richardson, 1988) RICJ880111 - Relative preference value at C4 (Richardson-Richardson, 1988) RICJ880112 - Relative preference value at C3 (Richardson-Richardson, 1988) RICJ880113 - Relative preference value at C2 (Richardson-Richardson, 1988) RICJ880114 - Relative preference value at C1 (Richardson-Richardson, 1988) RICJ880115 - Relative preference value at C-cap (Richardson-Richardson, 1988) RICJ880116 - Relative preference value at C' (Richardson-Richardson, 1988) RICJ880117 - Relative preference value at C'' (Richardson-Richardson, 1988) ROBB760101 - Information measure for alpha-helix (Robson-Suzuki, 1976) ROBB760102 - Information measure for N-terminal helix (Robson-Suzuki, 1976) ROBB760103 - Information measure for middle helix (Robson-Suzuki, 1976) ROBB760104 - Information measure for C-terminal helix (Robson-Suzuki, 1976) ROBB760105 - Information measure for extended (Robson-Suzuki, 1976) ROBB760106 - Information measure for pleated-sheet (Robson-Suzuki, 1976) ROBB760107 - Information measure for extended without H-bond (Robson-Suzuki, 1976) ROBB760108 - Information measure for turn (Robson-Suzuki, 1976) ROBB760109 - Information measure for N-terminal turn (Robson-Suzuki, 1976) ROBB760110 - Information measure for middle turn (Robson-Suzuki, 1976) ROBB760111 - Information measure for C-terminal turn (Robson-Suzuki, 1976) ROBB760112 - Information measure for coil (Robson-Suzuki, 1976) ROBB760113 - Information measure for loop (Robson-Suzuki, 1976) ROBB790101 - Hydration free energy (Robson-Osguthorpe, 1979) ROSG850101 - Mean area buried on transfer (Rose et al., 1985) ROSG850102 - Mean fractional area loss (Rose et al., 1985) ROSM880101 - Side chain hydropathy, uncorrected for solvation (Roseman, 1988) ROSM880102 - Side chain hydropathy, corrected for solvation (Roseman, 1988) ROSM880103 - Loss of Side chain hydropathy by helix formation (Roseman, 1988) SIMZ760101 - Transfer free energy (Simon, 1976), Cited by Charton-Charton (1982) SNEP660101 - Principal component I (Sneath, 1966) SNEP660102 - Principal component II (Sneath, 1966) SNEP660103 - Principal component III (Sneath, 1966) SNEP660104 - Principal component IV (Sneath, 1966) SUEM840101 - Zimm-Bragg parameter s at 20 C (Sueki et al., 1984) SUEM840102 - Zimm-Bragg parameter sigma x 1.0E4 (Sueki et al., 1984) SWER830101 - Optimal matching hydrophobicity (Sweet-Eisenberg, 1983) TANS770101 - Normalized frequency of alpha-helix (Tanaka-Scheraga, 1977) TANS770102 - Normalized frequency of isolated helix (Tanaka-Scheraga, 1977) TANS770103 - Normalized frequency of extended structure (Tanaka-Scheraga, 1977) TANS770104 - Normalized frequency of chain reversal R (Tanaka-Scheraga, 1977) TANS770105 - Normalized frequency of chain reversal S (Tanaka-Scheraga, 1977) TANS770106 - Normalized frequency of chain reversal D (Tanaka-Scheraga, 1977) TANS770107 - Normalized frequency of left-handed helix (Tanaka-Scheraga, 1977) TANS770108 - Normalized frequency of zeta R (Tanaka-Scheraga, 1977) TANS770109 - Normalized frequency of coil (Tanaka-Scheraga, 1977) TANS770110 - Normalized frequency of chain reversal (Tanaka-Scheraga, 1977) VASM830101 - Relative population of conformational state A (Vasquez et al., 1983) VASM830102 - Relative population of conformational state C (Vasquez et al., 1983) VASM830103 - Relative population of conformational state E (Vasquez et al., 1983) VELV850101 - Electron-ion interaction potential (Veljkovic et al., 1985) VENT840101 - Bitterness (Venanzi, 1984) VHEG790101 - Transfer free energy to lipophilic phase (von Heijne-Blomberg, 1979) WARP780101 - Average interactions per side chain atom (Warme-Morgan, 1978) WEBA780101 - RF value in high salt chromatography (Weber-Lacey, 1978) WERD780101 - Propensity to be buried inside (Wertz-Scheraga, 1978) WERD780102 - Free energy change of epsilon(i) to epsilon(ex) (Wertz-Scheraga, 1978) WERD780103 - Free energy change of alpha(Ri) to alpha(Rh) (Wertz-Scheraga, 1978) WERD780104 - Free energy change of epsilon(i) to alpha(Rh) (Wertz-Scheraga, 1978) WOEC730101 - Polar requirement (Woese, 1973) WOLR810101 - Hydration potential (Wolfenden et al., 1981) WOLS870101 - Principal property value z1 (Wold et al., 1987) WOLS870102 - Principal property value z2 (Wold et al., 1987) WOLS870103 - Principal property value z3 (Wold et al., 1987) YUTK870101 - Unfolding Gibbs energy in water, pH7.0 (Yutani et al., 1987) YUTK870102 - Unfolding Gibbs energy in water, pH9.0 (Yutani et al., 1987) YUTK870103 - Activation Gibbs energy of unfolding, pH7.0 (Yutani et al., 1987) YUTK870104 - Activation Gibbs energy of unfolding, pH9.0 (Yutani et al., 1987) ZASB820101 - Dependence of partition coefficient on ionic strength (Zaslavsky et al., 1982) ZIMJ680101 - Hydrophobicity (Zimmerman et al., 1968) ZIMJ680102 - Bulkiness (Zimmerman et al., 1968) ZIMJ680103 - Polarity (Zimmerman et al., 1968) ZIMJ680104 - Isoelectric point (Zimmerman et al., 1968) ZIMJ680105 - RF rank (Zimmerman et al., 1968) AURR980101 - Normalized positional residue frequency at helix termini N4'(Aurora and Rose, 1998) AURR980102 - Normalized positional residue frequency at helix termini N"' (Aurora and Rose, 1998) AURR980103 - Normalized positional residue frequency at helix termini N" (Aurora and Rose, 1998) AURR980104 - Normalized positional residue frequency at helix termini N'(Aurora and Rose, 1998) AURR980105 - Normalized positional residue frequency at helix termini Nc (Aurora and Rose, 1998) AURR980106 - Normalized positional residue frequency at helix termini N1 (Aurora and Rose, 1998) AURR980107 - Normalized positional residue frequency at helix termini N2 (Aurora and Rose, 1998) AURR980108 - Normalized positional residue frequency at helix termini N3 (Aurora and Rose, 1998) AURR980109 - Normalized positional residue frequency at helix termini N4 (Aurora and Rose, 1998) AURR980110 - Normalized positional residue frequency at helix termini N5 (Aurora and Rose, 1998) AURR980111 - Normalized positional residue frequency at helix termini C5 (Aurora and Rose, 1998) AURR980112 - Normalized positional residue frequency at helix termini C4 (Aurora and Rose, 1998) AURR980113 - Normalized positional residue frequency at helix termini C3 (Aurora and Rose, 1998) AURR980114 - Normalized positional residue frequency at helix termini C2 (Aurora and Rose, 1998) AURR980115 - Normalized positional residue frequency at helix termini C1 (Aurora and Rose, 1998) AURR980116 - Normalized positional residue frequency at helix termini Cc (Aurora and Rose, 1998) AURR980117 - Normalized positional residue frequency at helix termini C' (Aurora and Rose, 1998) AURR980118 - Normalized positional residue frequency at helix termini C" (Aurora and Rose, 1998) AURR980119 - Normalized positional residue frequency at helix termini C"' (Aurora and Rose, 1998) AURR980120 - Normalized positional residue frequency at helix termini C4' (Aurora and Rose, 1998) ONEK900101 - Delta G values for the peptides extrapolated to 0 M urea (O'Neil and DeGrado, 1990) ONEK900102 - Helix formation parameters (delta delta G) (O'Neil and DeGrado, 1990) VINM940101 - Normalized flexibility parameters (B-values), average (Vihinen et al., 1994) VINM940102 - Normalized flexibility parameters (B-values) for each residue surrounded by VINM940103 - Normalized flexibility parameters (B-values) for each residue surrounded by VINM940104 - Normalized flexibility parameters (B-values) for each residue surrounded by MUNV940101 - Free energy in alpha-helical conformation (Munoz and Serrano et al., 1994) MUNV940102 - Free energy in alpha-helical region (Munoz and Serrano et al., 1994) MUNV940103 - Free energy in beta-strand conformation (Munoz and Serrano et al., 1994) MUNV940104 - Free energy in beta-strand region (Munoz and Serrano et al., 1994) MUNV940105 - Free energy in beta-strand region (Munoz and Serrano et al., 1994) WIMW960101 - Free energies of transfer of AcWl-X-LL peptides from bilayer interface to AMINOCOUNTA - Count of amino acid: A AMINOCOUNTR - Count of amino acid: R AMINOCOUNTN - Count of amino acid: N AMINOCOUNTD - Count of amino acid: D AMINOCOUNTC - Count of amino acid: C AMINOCOUNTQ - Count of amino acid: Q AMINOCOUNTE - Count of amino acid: E AMINOCOUNTG - Count of amino acid: G AMINOCOUNTH - Count of amino acid: H AMINOCOUNTI - Count of amino acid: I AMINOCOUNTL - Count of amino acid: L AMINOCOUNTK - Count of amino acid: K AMINOCOUNTM - Count of amino acid: M AMINOCOUNTF - Count of amino acid: F AMINOCOUNTP - Count of amino acid: P AMINOCOUNTS - Count of amino acid: S AMINOCOUNTT - Count of amino acid: T AMINOCOUNTW - Count of amino acid: W AMINOCOUNTY - Count of amino acid: Y AMINOCOUNTV - Count of amino acid: V

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